PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10024252
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family GRAS
Protein Properties Length: 543aa    MW: 62084.5 Da    PI: 5.5264
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10024252genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS266.78e-821405232374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn...sseelaalklfsevsPilkfsh 95 
                   e Ll++Ae v ++++  a alL+    l+s++g+p+qRl ++f +AL+ r++r ++ + ++  p s+ ++++   +++e+a++ +     P++++ h
  Lus10024252 140 AEYLLAAAERVGDKQFPHAAALLNLCDALSSKTGNPVQRLGHCFSRALRDRISRdMGRGEVDNKPNSPPDPHDsmlTTTEFAIQGMERGEMPMFQVPH 237
                  5789**************************************************8888777777666666655565555666666677889******* PP

         GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egpp..slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak..r 185
                  l+  qaIle v +++++H+iD+ i +G +W+aL+q L sR+    +++p   lRiT+v+ ++ + + +++etg rL++fA+++ +pf+f+++v++  r
  Lus10024252 238 LVGIQAILENVTTSNKIHVIDLRIRNGQHWVALIQGLVSRRsdptNPQPveLLRITAVETSSDECSSSIRETGCRLSDFAKAMSIPFRFEIVVMEdnR 335
                  **************************************99977764455558********9999***************************9776468 PP

         GRAS 186 ledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.ee 281
                  +  ++++++ ++  +E+l+V +   l rll ++ + e     v+k++k+++P+v++ ve ea++ns++F +rf+eal +ysa+f+ +e   p+ +  +
  Lus10024252 336 WIGFKPDRFGLNWdEESLVVYSEWGLRRLLTRPREAER----VVKTLKQMKPRVMITVEVEANLNSPNFSARFVEALFHYSAVFENVECCNPSRDcPN 429
                  8899*******98899**************66666666....*********************************************988888777** PP

         GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  r ++E ++lg +i+n++a+eg+er  r  + e Wr+ ++++G+++++ se a+ qakl ++k+  ++ y++  + +s+vlg k+ +++ vS W+
  Lus10024252 430 RETIETVYLGDQISNILATEGDERYLRSVKIEVWRKFFKQFGMEEIEPSEAAMHQAKLFMEKYVsEQHYTIGMDGKSMVLGFKTTAMICVSTWK 523
                  ***************************************************************98888*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.731113502IPR005202Transcription factor GRAS
PfamPF035142.7E-79140523IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MDQFSKSTPD FNYVDHDQWL RLQFSPSFPL LDHHEMDDGY FSSQRRSNFD LLHKYGFQPV  60
TESVPPPQEK STAALIEQLE EEEEEMNEVP LSAEEVVRIA GMRIVQHSSR KAGSPSMLQI  120
PFDPSLSYLS HQDLKNVELA EYLLAAAERV GDKQFPHAAA LLNLCDALSS KTGNPVQRLG  180
HCFSRALRDR ISRDMGRGEV DNKPNSPPDP HDSMLTTTEF AIQGMERGEM PMFQVPHLVG  240
IQAILENVTT SNKIHVIDLR IRNGQHWVAL IQGLVSRRSD PTNPQPVELL RITAVETSSD  300
ECSSSIRETG CRLSDFAKAM SIPFRFEIVV MEDNRWIGFK PDRFGLNWDE ESLVVYSEWG  360
LRRLLTRPRE AERVVKTLKQ MKPRVMITVE VEANLNSPNF SARFVEALFH YSAVFENVEC  420
CNPSRDCPNR ETIETVYLGD QISNILATEG DERYLRSVKI EVWRKFFKQF GMEEIEPSEA  480
AMHQAKLFME KYVSEQHYTI GMDGKSMVLG FKTTAMICVS TWKFVQLARL ASTKRDLRVE  540
FY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-3015852322375GRAS family transcription factor containing p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-48RGA-like 2